STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_602Uncharacterized protein. (937 aa)    
Predicted Functional Partners:
Vbra_6085
TOG domain-containing protein.
   
 0.995
Vbra_19925
Uncharacterized protein.
    
 0.972
Vbra_10694
Matrin-type domain-containing protein.
    
 0.968
Vbra_9959
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.964
Vbra_11729
Uncharacterized protein.
    
 0.940
Vbra_5211
Uncharacterized protein.
   
 0.935
Vbra_23133
Uncharacterized protein.
   
 0.935
Vbra_19217
PSP domain-containing protein.
   
 0.916
Vbra_11478
RRM domain-containing protein.
    
  0.880
Vbra_7643
Uncharacterized protein.
   
 0.838
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.