STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_4238Uncharacterized protein. (541 aa)    
Predicted Functional Partners:
Vbra_18726
Importin N-terminal domain-containing protein.
  
 0.816
Vbra_6820
Importin N-terminal domain-containing protein.
   
 0.720
Vbra_6005
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
    
   0.508
Vbra_18927
MIF4G domain-containing protein.
   
 
 0.479
Vbra_8102
Nuclear cap-binding protein subunit 2.
    
 
 0.472
Vbra_23383
Uncharacterized protein.
  
     0.471
Vbra_6492
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.445
Vbra_8460
RanBD1 domain-containing protein.
   
 
 0.436
Vbra_15220
RanBD1 domain-containing protein.
   
 
 0.436
Vbra_15665
AAA domain-containing protein.
   
 
  0.403
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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