Vbra_8944 protein (Vitrella brassicaformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Vbra_8944

Acetyl-coenzyme A synthetase. (691 aa)

Predicted Functional Partners:

Vbra_14254

0.776

Vbra_11458

0.773

Vbra_3029

0.767

Vbra_7231

0.757

Vbra_11127

0.755

Vbra_19195

0.754

Vbra_6119

0.752

Vbra_18864

0.752

Vbra_15299

0.749

Vbra_9372

0.740

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_11127	Vbra_11458	A0A0G4EC37	A0A0G4EDS6	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Aldedh domain-containing protein.	0.645
Vbra_11127	Vbra_14254	A0A0G4EC37	A0A0G4F1F0	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.848
Vbra_11127	Vbra_18864	A0A0G4EC37	A0A0G4GW22	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.768
Vbra_11127	Vbra_3029	A0A0G4EC37	A0A0G4F755	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.846
Vbra_11127	Vbra_6119	A0A0G4EC37	A0A0G4G1C0	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.768
Vbra_11127	Vbra_8944	A0A0G4EC37	A0A0G4FAE2	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Acetyl-coenzyme A synthetase.	0.755
Vbra_11458	Vbra_11127	A0A0G4EDS6	A0A0G4EC37	Aldedh domain-containing protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.645
Vbra_11458	Vbra_14254	A0A0G4EDS6	A0A0G4F1F0	Aldedh domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.738
Vbra_11458	Vbra_15299	A0A0G4EDS6	A0A0G4FFL4	Aldedh domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.854
Vbra_11458	Vbra_18864	A0A0G4EDS6	A0A0G4GW22	Aldedh domain-containing protein.	Uncharacterized protein.	0.650
Vbra_11458	Vbra_19195	A0A0G4EDS6	A0A0G4GZP4	Aldedh domain-containing protein.	MR_MLE domain-containing protein.	0.452
Vbra_11458	Vbra_3029	A0A0G4EDS6	A0A0G4F755	Aldedh domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.718
Vbra_11458	Vbra_6119	A0A0G4EDS6	A0A0G4G1C0	Aldedh domain-containing protein.	Uncharacterized protein.	0.650
Vbra_11458	Vbra_7231	A0A0G4EDS6	A0A0G4EFU6	Aldedh domain-containing protein.	Uncharacterized protein.	0.642
Vbra_11458	Vbra_8944	A0A0G4EDS6	A0A0G4FAE2	Aldedh domain-containing protein.	Acetyl-coenzyme A synthetase.	0.773
Vbra_11458	Vbra_9372	A0A0G4EDS6	A0A0G4FQ60	Aldedh domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.841
Vbra_14254	Vbra_11127	A0A0G4F1F0	A0A0G4EC37	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.848
Vbra_14254	Vbra_11458	A0A0G4F1F0	A0A0G4EDS6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldedh domain-containing protein.	0.738
Vbra_14254	Vbra_15299	A0A0G4F1F0	A0A0G4FFL4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.927
Vbra_14254	Vbra_18864	A0A0G4F1F0	A0A0G4GW22	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.799