STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_4371Uncharacterized protein. (472 aa)    
Predicted Functional Partners:
Vbra_18519
PNP_UDP_1 domain-containing protein.
     
 0.796
Vbra_11278
CTP_transf_like domain-containing protein.
     
 0.775
Vbra_12522
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
     
 0.737
Vbra_13195
Nudix hydrolase domain-containing protein.
     
 0.733
Vbra_5651
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
     
 0.731
Vbra_13049
A_deaminase domain-containing protein.
   
 
 0.730
Vbra_13048
Uncharacterized protein.
   
 
 0.730
Vbra_7143
IU_nuc_hydro domain-containing protein.
     
 0.722
Vbra_5376
IU_nuc_hydro domain-containing protein.
     
 0.722
Vbra_21092
IU_nuc_hydro domain-containing protein.
     
 0.722
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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