STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_14858Uncharacterized protein. (123 aa)    
Predicted Functional Partners:
Vbra_22063
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
 
 0.999
Vbra_19961
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.998
Vbra_20042
Uncharacterized protein.
   
 0.998
Vbra_6968
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 0.998
Vbra_3650
Uncharacterized protein.
   
 0.998
Vbra_12191
Uncharacterized protein.
  
 0.998
Vbra_12506
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
  
 0.998
Vbra_22908
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.998
Vbra_20701
Ribos_L4_asso_C domain-containing protein.
  
 0.998
Vbra_12699
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.998
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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