STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_9046Uncharacterized protein. (1085 aa)    
Predicted Functional Partners:
Vbra_21403
RNase_PH domain-containing protein.
   
 0.993
Vbra_18711
Uncharacterized protein.
   
 0.993
Vbra_2283
Uncharacterized protein.
   
 0.992
Vbra_6791
Uncharacterized protein.
   
 0.990
Vbra_15615
Uncharacterized protein.
   
 0.989
Vbra_22941
Uncharacterized protein.
   
 0.987
Vbra_9583
KH_dom_type_1 domain-containing protein.
   
 0.987
Vbra_22523
Uncharacterized protein.
   
 0.986
Vbra_13788
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
 
 0.986
Vbra_14720
RNase_PH domain-containing protein.
   
 0.986
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.