STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_15177Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)    
Predicted Functional Partners:
Vbra_4919
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.988
Vbra_23101
WD_REPEATS_REGION domain-containing protein.
   
 0.988
Vbra_20285
WD_REPEATS_REGION domain-containing protein.
   
 0.985
Vbra_14552
Uncharacterized protein.
   
 0.977
Vbra_12608
Uncharacterized protein.
 
 
  0.932
Vbra_19904
Protein transport protein sec16; Belongs to the SEC16 family.
    
 0.914
Vbra_13216
PNPLA domain-containing protein.
 
      0.899
Vbra_22497
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.842
Vbra_8696
Uncharacterized protein.
   
 
 0.822
Vbra_23122
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.814
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.