Vbra_15511 protein (Vitrella brassicaformis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Vbra_15511

Uncharacterized protein. (373 aa)

Predicted Functional Partners:

Vbra_12473

0.784

Vbra_15387

0.784

Vbra_9248

0.784

Vbra_11337

0.753

Vbra_14835

0.753

Vbra_11464

0.608

Vbra_3082

0.604

Vbra_5020

0.568

Vbra_15321

0.546

Vbra_15263

0.532

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_11337	Vbra_11464	A0A0G4EDS5	A0A0G4EEK0	HATPase_c domain-containing protein.	Uncharacterized protein.	0.951
Vbra_11337	Vbra_12473	A0A0G4EDS5	A0A0G4ENJ1	HATPase_c domain-containing protein.	HATPase_c domain-containing protein.	0.689
Vbra_11337	Vbra_15263	A0A0G4EDS5	A0A0G4FGE3	HATPase_c domain-containing protein.	Uncharacterized protein.	0.776
Vbra_11337	Vbra_15321	A0A0G4EDS5	A0A0G4FFW8	HATPase_c domain-containing protein.	Uncharacterized protein.	0.999
Vbra_11337	Vbra_15387	A0A0G4EDS5	A0A0G4FGS7	HATPase_c domain-containing protein.	Uncharacterized protein.	0.679
Vbra_11337	Vbra_15511	A0A0G4EDS5	A0A0G4FIY3	HATPase_c domain-containing protein.	Uncharacterized protein.	0.753
Vbra_11337	Vbra_3082	A0A0G4EDS5	A0A0G4FSW6	HATPase_c domain-containing protein.	CS domain-containing protein.	0.926
Vbra_11337	Vbra_9248	A0A0G4EDS5	A0A0G4FK69	HATPase_c domain-containing protein.	Uncharacterized protein.	0.712
Vbra_11464	Vbra_11337	A0A0G4EEK0	A0A0G4EDS5	Uncharacterized protein.	HATPase_c domain-containing protein.	0.951
Vbra_11464	Vbra_12473	A0A0G4EEK0	A0A0G4ENJ1	Uncharacterized protein.	HATPase_c domain-containing protein.	0.905
Vbra_11464	Vbra_14835	A0A0G4EEK0	A0A0G4FB63	Uncharacterized protein.	HATPase_c domain-containing protein.	0.951
Vbra_11464	Vbra_15263	A0A0G4EEK0	A0A0G4FGE3	Uncharacterized protein.	Uncharacterized protein.	0.779
Vbra_11464	Vbra_15321	A0A0G4EEK0	A0A0G4FFW8	Uncharacterized protein.	Uncharacterized protein.	0.537
Vbra_11464	Vbra_15387	A0A0G4EEK0	A0A0G4FGS7	Uncharacterized protein.	Uncharacterized protein.	0.905
Vbra_11464	Vbra_15511	A0A0G4EEK0	A0A0G4FIY3	Uncharacterized protein.	Uncharacterized protein.	0.608
Vbra_11464	Vbra_3082	A0A0G4EEK0	A0A0G4FSW6	Uncharacterized protein.	CS domain-containing protein.	0.672
Vbra_11464	Vbra_9248	A0A0G4EEK0	A0A0G4FK69	Uncharacterized protein.	Uncharacterized protein.	0.905
Vbra_12473	Vbra_11337	A0A0G4ENJ1	A0A0G4EDS5	HATPase_c domain-containing protein.	HATPase_c domain-containing protein.	0.689
Vbra_12473	Vbra_11464	A0A0G4ENJ1	A0A0G4EEK0	HATPase_c domain-containing protein.	Uncharacterized protein.	0.905
Vbra_12473	Vbra_14835	A0A0G4ENJ1	A0A0G4FB63	HATPase_c domain-containing protein.	HATPase_c domain-containing protein.	0.697

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

28

average node degree:

5.09

avg. local clustering coefficient:

0.945

expected number of edges:

13

PPI enrichment p-value:

0.000238

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005985

Sucrose metabolic process

3 of 3

2.23

1.38

0.0025

GO:0009401

Phosphoenolpyruvate-dependent sugar phosphotransferase system

4 of 28

1.39

0.96

0.0060

GO:0005975

Carbohydrate metabolic process

6 of 138

0.87

0.63

0.0060

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004564

Beta-fructofuranosidase activity

3 of 3

2.23

1.65

0.00074

GO:0008982

protein-N(PI)-phosphohistidine-sugar phosphotransferase activity

4 of 21

1.51

1.3

0.00088

GO:0004553

Hydrolase activity, hydrolyzing O-glycosyl compounds

5 of 36

1.38

1.22

0.00074

GO:0016773

Phosphotransferase activity, alcohol group as acceptor

5 of 58

1.17

1.0

0.0011

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1197

Mixed, incl. Glycosidase, and Amino sugar metabolic process

7 of 16

1.87

3.76

2.85e-10

CL:1196

Import across plasma membrane, and Glycosidase

9 of 31

1.7

3.64

3.74e-12

CL:1195

Mixed, incl. Phosphotransferase system (PTS), and Pentose phosphate pathway

10 of 60

1.46

2.76

3.84e-12

CL:1194

Mixed, incl. Phosphotransferase system (PTS), and Glycolysis / Gluconeogenesis

11 of 83

1.36

2.45

1.10e-12

CL:1218

Glycosidase, and Mannose-6-phosphate isomerase, type I

2 of 5

1.84

0.79

0.0308

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00500

Starch and sucrose metabolism

6 of 69

1.17

0.00012

map02060

Phosphotransferase system (PTS)

4 of 30

1.36

1.14

0.0013

map00051

Fructose and mannose metabolism

3 of 21

1.39

0.89

0.0091

map00052

Galactose metabolism

3 of 25

1.31

0.83

0.0109

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0326

Glycosidase

4 of 13

1.72

1.66

0.00022

KW-0598

Phosphotransferase system

3 of 12

1.63

1.09

0.0050

KW-0119

Carbohydrate metabolism

3 of 19

1.43

0.88

0.0111

KW-0762

Sugar transport

2 of 7

1.69

0.7

0.0426

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00367

Phosphotransferase system, EIIB

2 of 2

2.23

0.71

0.0495

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR023296

Glycosyl hydrolase, five-bladed beta-propellor domain superfamily

3 of 3

2.23

1.39

0.0024

IPR013189

Glycosyl hydrolase family 32, C-terminal

3 of 3

2.23

1.39

0.0024

IPR013148

Glycosyl hydrolase family 32, N-terminal

3 of 3

2.23

1.39

0.0024

IPR006232

Sucrose-6-phosphate hydrolase

3 of 3

2.23

1.39

0.0024

IPR001362

Glycoside hydrolase, family 32

3 of 3

2.23

1.39

0.0024

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00640

Glycosyl hydrolases family 32

3 of 3

2.23

1.9

0.00023

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