STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_15513RRM domain-containing protein. (292 aa)    
Predicted Functional Partners:
Vbra_7324
Suf domain-containing protein.
   
 0.896
Vbra_22235
Small nuclear ribonucleoprotein Sm D2.
   
 0.861
Vbra_6085
TOG domain-containing protein.
   
 0.860
Vbra_639
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.860
Vbra_11947
Small nuclear ribonucleoprotein Sm D3.
   
 0.858
Vbra_15509
Sm domain-containing protein.
   
 0.857
Vbra_3530
Matrin-type domain-containing protein.
   
 0.848
Vbra_12067
WD_REPEATS_REGION domain-containing protein.
    
 0.846
Vbra_3040
Symplekin_C domain-containing protein.
   
 0.846
Vbra_11868
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.845
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.