STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_214852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. (229 aa)    
Predicted Functional Partners:
Vbra_16196
GHMP_kinases_N domain-containing protein.
 
 
 0.930
Vbra_4867
Uncharacterized protein.
 
  
 0.916
Vbra_18873
TRANSKETOLASE_1 domain-containing protein.
 
   
 0.592
Vbra_22230
PALP domain-containing protein.
     
 0.580
Vbra_22684
Uncharacterized protein.
  
   
 0.575
Vbra_11326
Uncharacterized protein.
  
   
 0.558
Vbra_13635
Uncharacterized protein.
      
 0.545
Vbra_4894
Uncharacterized protein.
     
 0.525
Vbra_14040
IGPS domain-containing protein.
     
 0.525
Vbra_16866
Flavokinase domain-containing protein.
     
 0.510
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.