STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_21545Uncharacterized protein. (499 aa)    
Predicted Functional Partners:
Vbra_19554
GP-PDE domain-containing protein.
 
 
 0.897
Vbra_7437
GP-PDE domain-containing protein.
  
 
 0.721
Vbra_8665
GP-PDE domain-containing protein.
  
 
 0.721
Vbra_8710
GP-PDE domain-containing protein.
  
 
 0.721
Vbra_5887
Pterin-binding domain-containing protein.
     
 0.706
Vbra_5322
GTP_cyclohydroI domain-containing protein.
   
 
  0.664
Vbra_15823
Phos_pyr_kin domain-containing protein.
    
 0.660
Vbra_19109
TENA_THI-4 domain-containing protein.
    
 0.660
Vbra_3958
Aminotran_1_2 domain-containing protein.
    
 0.656
Vbra_11773
LMWPc domain-containing protein.
    
 0.647
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.