STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_21553Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (323 aa)    
Predicted Functional Partners:
Vbra_14392
Nsp1_C domain-containing protein.
     
 0.940
Vbra_3972
Uncharacterized protein.
   
 0.811
Vbra_21452
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.811
Vbra_7838
MIF4G domain-containing protein.
   
 0.749
Vbra_20769
MI domain-containing protein.
   
 0.749
Vbra_13501
Uncharacterized protein.
   
 0.749
Vbra_14176
MIF4G domain-containing protein.
   
 0.749
Vbra_21523
Uncharacterized protein.
   
 0.749
Vbra_21701
MIF4G domain-containing protein.
   
 0.749
Vbra_16962
MIF4G domain-containing protein.
   
 0.749
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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