STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3100Protein YIPF. (193 aa)    
Predicted Functional Partners:
Vbra_14717
Protein kinase domain-containing protein.
     
 0.943
Vbra_3533
Trehalase.
  
 0.821
Vbra_7635
Uncharacterized protein.
  
 0.700
Vbra_18764
Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
     
 0.650
Vbra_4757
Aamy domain-containing protein.
  
 0.646
Vbra_11534
Uncharacterized protein.
  
 0.646
Vbra_8800
Aamy domain-containing protein.
  
 0.646
Vbra_21205
Aamy domain-containing protein.
  
 0.646
Vbra_16998
Aamy domain-containing protein.
  
 0.646
Vbra_19757
Aamy domain-containing protein.
  
 0.646
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.