STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_21609TYW3 domain-containing protein. (636 aa)    
Predicted Functional Partners:
Vbra_21640
C2H2-type domain-containing protein.
    
   0.880
Vbra_18434
Uncharacterized protein.
    
   0.880
Vbra_18870
Uncharacterized protein.
   
 
 0.819
Vbra_1171
SAM_MT_TRM5_TYW2 domain-containing protein.
 
 
 0.745
Vbra_5211
Uncharacterized protein.
   
 
  0.732
Vbra_23133
Uncharacterized protein.
   
 
  0.732
Vbra_15978
Uncharacterized protein.
  
 
 0.695
Vbra_9298
Flavodoxin-like domain-containing protein.
  
 
 0.686
Vbra_16866
Flavokinase domain-containing protein.
     
 0.678
Vbra_7816
Uncharacterized protein.
  
 
0.655
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.