STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_9461Uncharacterized protein. (952 aa)    
Predicted Functional Partners:
Vbra_13761
FHA domain-containing protein.
   
 0.826
Vbra_17671
Uncharacterized protein.
   
 0.823
Vbra_303
WD_REPEATS_REGION domain-containing protein.
    
 0.822
Vbra_1656
Uncharacterized protein.
    
 0.812
Vbra_6631
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 0.809
Vbra_8998
WD_REPEATS_REGION domain-containing protein.
    
 0.801
Vbra_21164
Uncharacterized protein.
    
 0.788
Vbra_20454
Inhibitor of growth protein.
   
 0.785
Vbra_12519
Uncharacterized protein.
   
 0.785
Vbra_1527
Uncharacterized protein.
    
 0.785
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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