STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_6005Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (331 aa)    
Predicted Functional Partners:
Vbra_6256
OBG-type G domain-containing protein.
 
 
   0.942
Vbra_6820
Importin N-terminal domain-containing protein.
    
   0.935
Vbra_19984
CPL domain-containing protein.
   
 
 0.890
Vbra_6817
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.870
Vbra_4041
RRM domain-containing protein.
   
   0.868
Vbra_17221
Uncharacterized protein.
   
 
 0.866
Vbra_4100
Brix domain-containing protein.
   
   0.864
Vbra_898
Brix domain-containing protein.
   
   0.863
Vbra_17517
Uncharacterized protein.
   
   0.860
Vbra_2617
Uncharacterized protein.
   
 
 0.855
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (12%) [HD]