STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_16567Alba domain-containing protein. (314 aa)    
Predicted Functional Partners:
Vbra_10138
Uncharacterized protein.
   
 0.863
Vbra_19202
Uncharacterized protein.
    
 0.860
Vbra_7721
Uncharacterized protein.
   
 0.859
Vbra_10595
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.852
Vbra_13922
Uncharacterized protein.
    
 0.836
Vbra_14464
Alba domain-containing protein.
    
 0.808
Vbra_14824
POP4 domain-containing protein.
    
 0.795
Vbra_14815
POP4 domain-containing protein.
    
 0.795
Vbra_14823
POP4 domain-containing protein.
    
 0.795
Vbra_4052
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 0.674
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.