Vbra_21837 protein (Vitrella brassicaformis)

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

Vbra_21837

Inositol-1-monophosphatase. (388 aa)

Predicted Functional Partners:

Vbra_10108

0.743

Vbra_11616

0.730

Vbra_3958

0.722

Vbra_13552

0.706

Vbra_20581

0.697

Vbra_12361

0.695

Vbra_8550

0.677

Vbra_18431

0.677

Vbra_14991

0.670

Vbra_12891

0.668

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_10108	Vbra_18431	A0A0G4GMC0	A0A0G4GR81	PRA-CH domain-containing protein.	Uncharacterized protein.	0.960
Vbra_10108	Vbra_21837	A0A0G4GMC0	A0A0G4G021	PRA-CH domain-containing protein.	Inositol-1-monophosphatase.	0.743
Vbra_10108	Vbra_3958	A0A0G4GMC0	A0A0G4EKA2	PRA-CH domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.994
Vbra_10108	Vbra_8550	A0A0G4GMC0	A0A0G4EZB1	PRA-CH domain-containing protein.	Uncharacterized protein.	0.960
Vbra_11616	Vbra_12891	A0A0G4EGT1	A0A0G4ERU7	Inos-1-P_synth domain-containing protein.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.758
Vbra_11616	Vbra_13552	A0A0G4EGT1	A0A0G4EUB4	Inos-1-P_synth domain-containing protein.	Uncharacterized protein.	0.726
Vbra_11616	Vbra_14991	A0A0G4EGT1	A0A0G4FCT6	Inos-1-P_synth domain-containing protein.	Uncharacterized protein.	0.416
Vbra_11616	Vbra_20581	A0A0G4EGT1	A0A0G4ENA2	Inos-1-P_synth domain-containing protein.	Uncharacterized protein.	0.726
Vbra_11616	Vbra_21837	A0A0G4EGT1	A0A0G4G021	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.730
Vbra_12361	Vbra_13552	A0A0G4EKT2	A0A0G4EUB4	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Uncharacterized protein.	0.537
Vbra_12361	Vbra_20581	A0A0G4EKT2	A0A0G4ENA2	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Uncharacterized protein.	0.537
Vbra_12361	Vbra_21837	A0A0G4EKT2	A0A0G4G021	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Inositol-1-monophosphatase.	0.695
Vbra_12361	Vbra_3958	A0A0G4EKT2	A0A0G4EKA2	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Aminotran_1_2 domain-containing protein.	0.564
Vbra_12891	Vbra_11616	A0A0G4ERU7	A0A0G4EGT1	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Inos-1-P_synth domain-containing protein.	0.758
Vbra_12891	Vbra_13552	A0A0G4ERU7	A0A0G4EUB4	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.729
Vbra_12891	Vbra_14991	A0A0G4ERU7	A0A0G4FCT6	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.669
Vbra_12891	Vbra_20581	A0A0G4ERU7	A0A0G4ENA2	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.658
Vbra_12891	Vbra_21837	A0A0G4ERU7	A0A0G4G021	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Inositol-1-monophosphatase.	0.668
Vbra_13552	Vbra_11616	A0A0G4EUB4	A0A0G4EGT1	Uncharacterized protein.	Inos-1-P_synth domain-containing protein.	0.726
Vbra_13552	Vbra_12361	A0A0G4EUB4	A0A0G4EKT2	Uncharacterized protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.537

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

45

average node degree:

8.18

avg. local clustering coefficient:

0.962

expected number of edges:

10

PPI enrichment p-value:

1.11e-15

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019634

Organic phosphonate metabolic process

7 of 11

2.39

5.56

3.10e-12

GO:0019700

Organic phosphonate catabolic process

4 of 8

2.28

2.65

6.70e-06

GO:0046434

Organophosphate catabolic process

5 of 29

1.82

2.3

6.70e-06

GO:0019637

Organophosphate metabolic process

8 of 221

1.14

1.3

6.70e-06

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0061695

Transferase complex, transferring phosphorus-containing groups

6 of 19

2.08

3.98

1.41e-09

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7349

Organic phosphonate metabolic process

9 of 11

2.5

8.1

7.56e-18

CL:7354

Organic phosphonate metabolic process

6 of 6

2.58

5.67

7.37e-12

CL:7344

Mixed, incl. Organic phosphonate transport, and Organic phosphonate metabolic process

10 of 45

1.93

5.45

2.08e-16

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00440

Phosphonate and phosphinate metabolism

6 of 12

2.28

4.7

1.42e-10

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1904176

Carbon phosphorus lyase complex

6 of 6

2.58

5.5

1.71e-11

GOCC:0061694

alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase complex

6 of 6

2.58

5.5

1.71e-11

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0456

Lyase

4 of 93

1.22

0.74

0.0162

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00866

The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to PUBMED:12757941. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.

2 of 3

2.41

1.17

0.0070

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