STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_2598Aminotran_1_2 domain-containing protein. (554 aa)    
Predicted Functional Partners:
Vbra_23145
PKS_KS domain-containing protein.
   
 0.943
Vbra_15478
Uncharacterized protein.
  
 
 0.937
Vbra_7414
PKS_AT domain-containing protein.
   
 0.917
Vbra_3421
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.912
Vbra_22230
PALP domain-containing protein.
    
 0.882
Vbra_12047
Carrier domain-containing protein.
   
 0.853
Vbra_8741
Carrier domain-containing protein.
   
 0.824
Vbra_11341
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.816
Vbra_13390
Aminotran_5 domain-containing protein.
    
 0.804
Vbra_4750
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.788
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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