STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_9657Uncharacterized protein. (214 aa)    
Predicted Functional Partners:
Vbra_15547
Uncharacterized protein.
   
 0.994
Vbra_21887
Uncharacterized protein.
   
0.994
Vbra_19289
Uncharacterized protein.
 
 
 0.990
Vbra_20937
Uncharacterized protein.
    
 0.975
Vbra_749
Uncharacterized protein.
   
 0.957
Vbra_22489
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.947
Vbra_20054
Uncharacterized protein.
    
 0.925
Vbra_19181
MPN domain-containing protein.
    
 
 0.867
Vbra_19424
Uncharacterized protein.
    
 0.852
Vbra_9777
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.840
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.