STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_16895Uncharacterized protein. (401 aa)    
Predicted Functional Partners:
Vbra_9738
Plug_translocon domain-containing protein.
   
 0.863
Vbra_17977
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 0.863
Vbra_13641
SRP54 domain-containing protein.
   
 
 0.748
Vbra_14129
ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.
  
 
 0.730
Vbra_7902
RF_PROK_I domain-containing protein.
  
 
 0.719
Vbra_17280
Uncharacterized protein.
     
 0.718
Vbra_22230
PALP domain-containing protein.
   
  
 0.717
Vbra_16492
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
 0.708
Vbra_22360
SRP54 domain-containing protein.
   
 0.708
Vbra_18372
SRP54 domain-containing protein.
   
 0.708
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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