STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3126Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (374 aa)    
Predicted Functional Partners:
Vbra_3818
Uncharacterized protein.
    
 0.978
Vbra_15905
Uncharacterized protein.
    
 0.967
Vbra_3962
Uncharacterized protein.
    
 0.929
Vbra_20544
TYR_PHOSPHATASE_2 domain-containing protein.
    
 0.889
Vbra_19329
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.845
Vbra_4868
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.763
Vbra_8982
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.763
Vbra_2506
Uncharacterized protein.
    
 0.747
Vbra_6906
Uncharacterized protein.
    
 0.722
Vbra_7704
Uncharacterized protein.
    
 0.722
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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