STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3145Prenylcys_lyase domain-containing protein. (531 aa)    
Predicted Functional Partners:
Vbra_11492
Uncharacterized protein.
     
 0.576
Vbra_11725
Epimerase domain-containing protein.
     
 0.576
Vbra_11777
Uncharacterized protein.
     
 0.576
Vbra_7556
Epimerase domain-containing protein.
     
 0.576
Vbra_14653
Uncharacterized protein.
     
 0.576
Vbra_22073
Epimerase domain-containing protein.
     
 0.576
Vbra_10086
Uncharacterized protein.
     
 0.576
Vbra_2099
Uncharacterized protein.
     
 0.453
Vbra_12312
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
      
 0.440
Vbra_8870
Uncharacterized protein.
      
 0.439
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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