STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3216Uncharacterized protein. (2455 aa)    
Predicted Functional Partners:
Vbra_5020
HECT domain-containing protein.
   
 0.968
Vbra_1172
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.885
Vbra_18712
RING-type domain-containing protein.
    
 0.813
Vbra_4708
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
0.804
Vbra_8442
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
0.804
Vbra_689
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
0.804
Vbra_16956
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
0.804
Vbra_7950
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.800
Vbra_22966
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.800
Vbra_2428
RING-type domain-containing protein.
    
 0.794
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (12%) [HD]