STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3270Peptidyl-prolyl cis-trans isomerase. (114 aa)    
Predicted Functional Partners:
Vbra_15162
Uncharacterized protein.
    
 0.774
Vbra_11228
Uncharacterized protein.
  
 
 0.740
Vbra_4894
Uncharacterized protein.
  
  
 0.696
Vbra_14040
IGPS domain-containing protein.
  
  
 0.696
Vbra_19092
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
 0.680
Vbra_896
Bac_surface_Ag domain-containing protein.
  
 
 0.656
Vbra_14497
TFIIS central domain-containing protein.
    
 
 0.627
Vbra_10759
BSD domain-containing protein.
    
   0.608
Vbra_5296
Uncharacterized protein.
    
 0.604
Vbra_1325
Protein kinase domain-containing protein.
    
 0.604
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.