STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22072XPA_C domain-containing protein. (225 aa)    
Predicted Functional Partners:
Vbra_22604
Helicase ATP-binding domain-containing protein.
    
 0.981
Vbra_11898
ERCC4 domain-containing protein.
    
 0.980
Vbra_17279
Uncharacterized protein.
    
 0.971
Vbra_8686
Uncharacterized protein.
    
 0.966
Vbra_17560
ERCC4 domain-containing protein.
    
 0.941
Vbra_18100
Uncharacterized protein.
   
 0.935
Vbra_20959
General transcription factor IIH subunit.
    
 0.919
Vbra_3192
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.912
Vbra_8865
Uncharacterized protein.
    
 0.907
Vbra_20121
DNA polymerase.
    
 0.875
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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