STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22979eIF2A domain-containing protein. (646 aa)    
Predicted Functional Partners:
Vbra_8267
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
0.883
Vbra_7149
Uncharacterized protein.
    
 
 0.576
Vbra_15827
Uncharacterized protein.
    
 
 0.576
Vbra_22350
XRN_N domain-containing protein.
    
 
 0.576
Vbra_16106
NTF2 domain-containing protein.
    
 
 0.566
Vbra_12995
Uncharacterized protein.
   
 
 0.500
Vbra_4350
Uncharacterized protein.
   
 
 0.500
Vbra_7071
RIO domain-containing protein.
   
   0.470
Vbra_13466
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 
 0.470
Vbra_22074
Tr-type G domain-containing protein.
   
 
 0.457
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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