STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_17269Uncharacterized protein. (554 aa)    
Predicted Functional Partners:
Vbra_20657
Uncharacterized protein.
  
 
 
 0.786
Vbra_13634
Uncharacterized protein.
  
  
 0.765
Vbra_14746
Uncharacterized protein.
  
 
 
 0.734
Vbra_3904
GAS domain-containing protein.
  
 
 
 0.677
Vbra_8514
GAS domain-containing protein.
  
 
 
 0.660
Vbra_20283
Uncharacterized protein.
    
 
 0.616
Vbra_15554
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.616
Vbra_11866
Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.547
Vbra_4126
Uncharacterized protein.
   
 
 0.547
Vbra_18446
Uncharacterized protein.
   
 
 0.547
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.