STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_6190DUF1995 domain-containing protein. (368 aa)    
Predicted Functional Partners:
Vbra_3134
Myotubularin phosphatase domain-containing protein.
   
 
 0.773
Vbra_20558
SAC domain-containing protein.
     
 0.752
Vbra_13243
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
     
 0.745
Vbra_4020
Uncharacterized protein.
     
 0.731
Vbra_20581
Uncharacterized protein.
     
 0.723
Vbra_13552
Uncharacterized protein.
     
 0.722
Vbra_11616
Inos-1-P_synth domain-containing protein.
     
 0.719
Vbra_19100
Uncharacterized protein.
     
 0.676
Vbra_14717
Protein kinase domain-containing protein.
     
 0.670
Vbra_13810
SAC domain-containing protein.
     
 0.668
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.