STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_17448DUF3479 domain-containing protein. (1361 aa)    
Predicted Functional Partners:
Vbra_2624
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
 
 
 0.950
Vbra_7326
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
 
 
 0.931
Vbra_18213
Mg-por_mtran_C domain-containing protein.
 
 
 0.888
Vbra_13675
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
  
 
 0.823
Vbra_3958
Aminotran_1_2 domain-containing protein.
    
 0.786
Vbra_12698
FAD_binding_3 domain-containing protein.
 
  
 0.762
Vbra_16645
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
 
 0.762
Vbra_10627
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
 
 0.762
Vbra_4244
AAA domain-containing protein.
    
 0.749
Vbra_2036
DUF3479 domain-containing protein.
  
  
 
0.747
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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