STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_17544PPM-type phosphatase domain-containing protein. (1054 aa)    
Predicted Functional Partners:
Vbra_5322
GTP_cyclohydroI domain-containing protein.
    
  0.501
Vbra_7310
Uncharacterized protein.
    
 0.495
Vbra_7328
Uncharacterized protein.
    
 0.495
Vbra_20639
RING-type domain-containing protein.
    
 0.495
Vbra_13809
Nucleoside diphosphate kinase.
    
  0.447
Vbra_15562
Uncharacterized protein.
    
  0.447
Vbra_21451
Nucleoside diphosphate kinase.
    
  0.447
Vbra_17871
Nucleoside diphosphate kinase.
    
  0.447
Vbra_20104
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.430
Vbra_11555
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.430
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.