STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_17447USP domain-containing protein; Belongs to the peptidase C19 family. (1800 aa)    
Predicted Functional Partners:
Vbra_11021
Uncharacterized protein.
   
 
 0.633
Vbra_10348
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.633
Vbra_15606
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.628
Vbra_1860
Elp3 domain-containing protein.
    
 
 0.617
Vbra_12899
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.606
Vbra_13176
Uncharacterized protein.
   
 
 0.605
Vbra_16963
Uncharacterized protein.
    
 
 0.603
Vbra_5395
Ribosomal_S17_N domain-containing protein.
    
 
 0.600
Vbra_13640
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
 
 0.600
Vbra_21519
Uncharacterized protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.600
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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