STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_22307Uncharacterized protein. (488 aa)    
Predicted Functional Partners:
Vbra_303
WD_REPEATS_REGION domain-containing protein.
    
   0.979
Vbra_4601
Uncharacterized protein.
  
   0.929
Vbra_18644
Enkurin domain-containing protein.
   
 
 0.923
Vbra_17892
Uncharacterized protein.
   
   0.920
Vbra_545
Uncharacterized protein.
   
   0.919
Vbra_12594
DUF667 domain-containing protein.
    
   0.836
Vbra_10982
Uncharacterized protein.
   
   0.835
Vbra_22106
Uncharacterized protein.
   
   0.835
Vbra_17487
Uncharacterized protein.
    
   0.727
Vbra_7742
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
   0.706
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (12%) [HD]