Vbra_23062 protein (Vitrella brassicaformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Vbra_23062

AMP-binding domain-containing protein. (706 aa)

Predicted Functional Partners:

Vbra_7791

0.912

Vbra_21251

0.912

Vbra_18899

0.887

Vbra_12096

0.769

Vbra_17487

0.738

Vbra_11643

0.735

Vbra_7335

0.735

Vbra_2988

0.735

Vbra_14163

0.735

Vbra_21745

0.735

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_11643	Vbra_17487	A0A0G4EF58	A0A0G4GDR7	Kinesin motor domain-containing protein.	Uncharacterized protein.	0.643
Vbra_11643	Vbra_18899	A0A0G4EF58	A0A0G4GWT1	Kinesin motor domain-containing protein.	TPR_REGION domain-containing protein.	0.808
Vbra_11643	Vbra_21251	A0A0G4EF58	A0A0G4F9D8	Kinesin motor domain-containing protein.	Uncharacterized protein.	0.829
Vbra_11643	Vbra_23062	A0A0G4EF58	A0A0G4GM14	Kinesin motor domain-containing protein.	AMP-binding domain-containing protein.	0.735
Vbra_11643	Vbra_7791	A0A0G4EF58	A0A0G4ELX0	Kinesin motor domain-containing protein.	Uncharacterized protein.	0.828
Vbra_12096	Vbra_17487	A0A0G4EK21	A0A0G4GDR7	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.911
Vbra_12096	Vbra_18899	A0A0G4EK21	A0A0G4GWT1	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.821
Vbra_12096	Vbra_21251	A0A0G4EK21	A0A0G4F9D8	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.851
Vbra_12096	Vbra_23062	A0A0G4EK21	A0A0G4GM14	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	AMP-binding domain-containing protein.	0.769
Vbra_12096	Vbra_7791	A0A0G4EK21	A0A0G4ELX0	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.835
Vbra_14163	Vbra_17487	A0A0G4EZY6	A0A0G4GDR7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.643
Vbra_14163	Vbra_18899	A0A0G4EZY6	A0A0G4GWT1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TPR_REGION domain-containing protein.	0.808
Vbra_14163	Vbra_21251	A0A0G4EZY6	A0A0G4F9D8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.829
Vbra_14163	Vbra_23062	A0A0G4EZY6	A0A0G4GM14	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	AMP-binding domain-containing protein.	0.735
Vbra_14163	Vbra_7791	A0A0G4EZY6	A0A0G4ELX0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.828
Vbra_17487	Vbra_11643	A0A0G4GDR7	A0A0G4EF58	Uncharacterized protein.	Kinesin motor domain-containing protein.	0.643
Vbra_17487	Vbra_12096	A0A0G4GDR7	A0A0G4EK21	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.911
Vbra_17487	Vbra_14163	A0A0G4GDR7	A0A0G4EZY6	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.643
Vbra_17487	Vbra_21251	A0A0G4GDR7	A0A0G4F9D8	Uncharacterized protein.	Uncharacterized protein.	0.809
Vbra_17487	Vbra_21745	A0A0G4GDR7	A0A0G4FWS2	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.643