Vbra_961 protein (Vitrella brassicaformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Vbra_961

ANK_REP_REGION domain-containing protein. (1046 aa)

Predicted Functional Partners:

Vbra_5344

0.677

Vbra_11391

0.628

Vbra_6859

0.626

Vbra_303

0.619

Vbra_10552

0.619

Vbra_13635

0.617

Vbra_15195

0.595

Vbra_17916

0.588

Vbra_18155

0.586

Vbra_4708

0.585

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_10552	Vbra_13635	A0A0G4H466	A0A0G4EV47	G domain-containing protein.	Uncharacterized protein.	0.527
Vbra_10552	Vbra_303	A0A0G4H466	A0A0G4GY98	G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.683
Vbra_10552	Vbra_5344	A0A0G4H466	A0A0G4EQF1	G domain-containing protein.	Protein kinase domain-containing protein.	0.790
Vbra_10552	Vbra_6859	A0A0G4H466	A0A0G4EBD1	G domain-containing protein.	Uncharacterized protein.	0.845
Vbra_10552	Vbra_961	A0A0G4H466	A0A0G4GPF7	G domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.619
Vbra_11391	Vbra_15195	A0A0G4EEC6	A0A0G4FEZ1	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.991
Vbra_11391	Vbra_6859	A0A0G4EEC6	A0A0G4EBD1	IFT81_CH domain-containing protein.	Uncharacterized protein.	0.823
Vbra_11391	Vbra_961	A0A0G4EEC6	A0A0G4GPF7	IFT81_CH domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.628
Vbra_13635	Vbra_10552	A0A0G4EV47	A0A0G4H466	Uncharacterized protein.	G domain-containing protein.	0.527
Vbra_13635	Vbra_18155	A0A0G4EV47	A0A0G4GKP0	Uncharacterized protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.619
Vbra_13635	Vbra_6859	A0A0G4EV47	A0A0G4EBD1	Uncharacterized protein.	Uncharacterized protein.	0.608
Vbra_13635	Vbra_961	A0A0G4EV47	A0A0G4GPF7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.617
Vbra_15195	Vbra_11391	A0A0G4FEZ1	A0A0G4EEC6	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.991
Vbra_15195	Vbra_6859	A0A0G4FEZ1	A0A0G4EBD1	Uncharacterized protein.	Uncharacterized protein.	0.549
Vbra_15195	Vbra_961	A0A0G4FEZ1	A0A0G4GPF7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.595
Vbra_17916	Vbra_303	A0A0G4GIN6	A0A0G4GY98	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.611
Vbra_17916	Vbra_4708	A0A0G4GIN6	A0A0G4EAB8	Protein kinase domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.712
Vbra_17916	Vbra_5344	A0A0G4GIN6	A0A0G4EQF1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.681
Vbra_17916	Vbra_6859	A0A0G4GIN6	A0A0G4EBD1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.728
Vbra_17916	Vbra_961	A0A0G4GIN6	A0A0G4GPF7	Protein kinase domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.588