STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_10330TRUD domain-containing protein. (612 aa)    
Predicted Functional Partners:
Vbra_12899
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
   0.769
Vbra_3701
G domain-containing protein.
   
   0.768
Vbra_5958
L51_S25_CI-B8 domain-containing protein.
   
   0.751
Vbra_10348
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
   0.750
Vbra_18996
KOW domain-containing protein.
   
   0.749
Vbra_11021
Uncharacterized protein.
    
   0.747
Vbra_15424
Uncharacterized protein.
    
   0.747
Vbra_19023
Uncharacterized protein.
    
   0.747
Vbra_7112
NOC3p domain-containing protein.
   
   0.713
Vbra_14676
CP-type G domain-containing protein.
   
   0.695
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.