STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_10350Uncharacterized protein. (230 aa)    
Predicted Functional Partners:
Vbra_7099
Uncharacterized protein.
  
 0.913
Vbra_20401
PsbP domain-containing protein.
  
 
 0.704
Vbra_1344
Uncharacterized protein.
  
 
 0.651
Vbra_15278
Uncharacterized protein.
  
  
  0.625
Vbra_6554
Uncharacterized protein.
  
  
  0.610
Vbra_18375
PsaL domain-containing protein.
  
 
 0.593
Vbra_21597
Uncharacterized protein.
  
 
 0.590
Vbra_13341
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
  
 
 0.566
Vbra_15787
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
  
 
 0.550
Vbra_3143
Uncharacterized protein.
  
     0.523
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.