Vbra_10356 protein (Vitrella brassicaformis)

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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Score

Vbra_10356

FYVE-type domain-containing protein. (1362 aa)

Predicted Functional Partners:

Vbra_13675

0.646

Vbra_18213

0.646

Vbra_4750

0.517

Vbra_4124

0.517

Vbra_20145

0.428

Vbra_7635

0.428

Vbra_3816

0.428

Vbra_4131

0.428

Vbra_17536

0.428

Vbra_6263

0.428

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_10356	Vbra_13675	A0A0G4GUW3	A0A0G4EV78	FYVE-type domain-containing protein.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.646
Vbra_10356	Vbra_17536	A0A0G4GUW3	A0A0G4GDV2	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_10356	Vbra_18213	A0A0G4GUW3	A0A0G4GLD3	FYVE-type domain-containing protein.	Mg-por_mtran_C domain-containing protein.	0.646
Vbra_10356	Vbra_20145	A0A0G4GUW3	A0A0G4EAZ5	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_10356	Vbra_3816	A0A0G4GUW3	A0A0G4EIK2	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_10356	Vbra_4124	A0A0G4GUW3	A0A0G4ERE3	FYVE-type domain-containing protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.517
Vbra_10356	Vbra_4131	A0A0G4GUW3	A0A0G4F5F5	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_10356	Vbra_4750	A0A0G4GUW3	A0A0G4EBX8	FYVE-type domain-containing protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.517
Vbra_10356	Vbra_6263	A0A0G4GUW3	A0A0G4GH13	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_10356	Vbra_7635	A0A0G4GUW3	A0A0G4EI41	FYVE-type domain-containing protein.	Uncharacterized protein.	0.428
Vbra_13675	Vbra_10356	A0A0G4EV78	A0A0G4GUW3	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	FYVE-type domain-containing protein.	0.646
Vbra_17536	Vbra_10356	A0A0G4GDV2	A0A0G4GUW3	Uncharacterized protein.	FYVE-type domain-containing protein.	0.428
Vbra_17536	Vbra_6263	A0A0G4GDV2	A0A0G4GH13	Uncharacterized protein.	Uncharacterized protein.	0.515
Vbra_17536	Vbra_7635	A0A0G4GDV2	A0A0G4EI41	Uncharacterized protein.	Uncharacterized protein.	0.856
Vbra_18213	Vbra_10356	A0A0G4GLD3	A0A0G4GUW3	Mg-por_mtran_C domain-containing protein.	FYVE-type domain-containing protein.	0.646
Vbra_20145	Vbra_10356	A0A0G4EAZ5	A0A0G4GUW3	Uncharacterized protein.	FYVE-type domain-containing protein.	0.428
Vbra_3816	Vbra_10356	A0A0G4EIK2	A0A0G4GUW3	Uncharacterized protein.	FYVE-type domain-containing protein.	0.428
Vbra_4124	Vbra_10356	A0A0G4ERE3	A0A0G4GUW3	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	FYVE-type domain-containing protein.	0.517
Vbra_4131	Vbra_10356	A0A0G4F5F5	A0A0G4GUW3	Uncharacterized protein.	FYVE-type domain-containing protein.	0.428
Vbra_4750	Vbra_10356	A0A0G4EBX8	A0A0G4GUW3	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	FYVE-type domain-containing protein.	0.517

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Network Stats

number of nodes:

11

number of edges:

46

average node degree:

8.36

avg. local clustering coefficient:

0.982

expected number of edges:

13

PPI enrichment p-value:

5.39e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008615

Pyridoxine biosynthetic process

4 of 5

2.64

3.21

9.79e-07

GO:0044283

Small molecule biosynthetic process

7 of 250

1.18

1.32

1.50e-05

GO:1901607

Alpha-amino acid biosynthetic process

4 of 85

1.41

1.18

0.0012

GO:0009088

Threonine biosynthetic process

2 of 7

2.19

1.18

0.0060

GO:0009070

Serine family amino acid biosynthetic process

2 of 12

1.96

1.03

0.0105

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004795

Threonine synthase activity

2 of 2

2.73

1.19

0.0069

GO:0030170

Pyridoxal phosphate binding

3 of 44

1.57

0.97

0.0090

GO:0016769

Transferase activity, transferring nitrogenous groups

2 of 18

1.78

0.71

0.0429

GO:0036094

Small molecule binding

8 of 660

0.82

0.64

0.0021

GO:1901363

Heterocyclic compound binding

9 of 1247

0.59

0.43

0.0071

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

9 of 1448

0.53

0.37

0.0123

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1872

Mixed, incl. Transcription elongation factor GreA/GreB, and rRNA (adenine) methyltransferase activity

4 of 6

2.56

3.07

1.60e-06

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00750

Vitamin B6 metabolism

5 of 10

2.43

4.32

2.86e-09

map00260

Glycine, serine and threonine metabolism

4 of 51

1.63

1.67

0.00013

map01230

Biosynthesis of amino acids

5 of 158

1.23

1.19

0.00025

map00270

Cysteine and methionine metabolism

3 of 58

1.45

1.01

0.0052

map00680

Methane metabolism

2 of 29

1.57

0.75

0.0304

(more ...)

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