STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_837Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (498 aa)    
Predicted Functional Partners:
Vbra_8491
Uncharacterized protein.
  
 
 0.787
Vbra_3288
Semialdhyde_dh domain-containing protein.
  
 
 0.774
Vbra_19249
Uncharacterized protein.
  
 
 0.770
Vbra_21195
Uncharacterized protein.
  
 
 0.762
Vbra_19878
Arginase; Belongs to the arginase family.
  
 
 0.761
Vbra_2439
Lyase_1 domain-containing protein.
  
 
 0.759
Vbra_12842
AA_kinase domain-containing protein.
    
 0.751
Vbra_17264
Uncharacterized protein.
    
 0.751
Vbra_15478
Uncharacterized protein.
    
 0.749
Vbra_5651
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
   
 
 0.722
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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