STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_18985Uncharacterized protein. (418 aa)    
Predicted Functional Partners:
Vbra_10768
Uncharacterized protein.
    
 0.996
Vbra_13243
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.996
Vbra_12072
Uncharacterized protein.
    
 0.992
Vbra_10989
DUF4206 domain-containing protein.
    
 
 0.988
Vbra_4152
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.956
Vbra_9677
Protein kinase domain-containing protein.
    
 0.956
Vbra_12359
Protein kinase domain-containing protein.
    
 0.946
Vbra_9844
Autophagy-related protein 3.
   
 0.881
Vbra_3016
Ubiquitin-like protein ATG12.
   
 0.874
Vbra_2092
ATG13 domain-containing protein.
    
 0.873
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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