STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_19170Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (437 aa)    
Predicted Functional Partners:
Vbra_22230
PALP domain-containing protein.
    
 0.855
Vbra_14737
Uncharacterized protein.
  
 0.794
Vbra_21272
Uncharacterized protein.
  
 0.794
Vbra_12698
FAD_binding_3 domain-containing protein.
  
 0.770
Vbra_21714
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
  
 
 0.757
Vbra_12961
Nudix hydrolase domain-containing protein.
  
 
 0.752
Vbra_4894
Uncharacterized protein.
  
 
  0.743
Vbra_14040
IGPS domain-containing protein.
  
 
  0.743
Vbra_2693
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.736
Vbra_5255
Uncharacterized protein.
  
 
 0.731
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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