STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_19404Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (243 aa)    
Predicted Functional Partners:
Vbra_14586
Rhodanese domain-containing protein.
  
 
 0.739
Vbra_19550
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.732
Vbra_11021
Uncharacterized protein.
  
 
 0.731
Vbra_12899
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.727
Vbra_15424
Uncharacterized protein.
   
   0.727
Vbra_2022
Uncharacterized protein.
   
 
 0.721
Vbra_13902
Uncharacterized protein.
   
 
 0.718
Vbra_17130
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.715
Vbra_19990
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
  0.713
Vbra_15409
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
  0.713
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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