Vbra_19826 protein (Vitrella brassicaformis)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Vbra_19826

PABC domain-containing protein. (353 aa)

Predicted Functional Partners:

Vbra_8570

0.820

Vbra_8102

0.808

Vbra_6202

0.807

Vbra_18927

0.754

Vbra_13934

0.746

Vbra_8872

0.746

Vbra_21553

0.746

Vbra_16651

0.746

Vbra_18526

0.746

Vbra_3972

0.743

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_13934	Vbra_18927	A0A0G4EXV1	A0A0G4GWN0	Uncharacterized protein.	MIF4G domain-containing protein.	0.666
Vbra_13934	Vbra_19826	A0A0G4EXV1	A0A0G4H7Q2	Uncharacterized protein.	PABC domain-containing protein.	0.746
Vbra_13934	Vbra_3972	A0A0G4EXV1	A0A0G4EJG7	Uncharacterized protein.	Uncharacterized protein.	0.811
Vbra_13934	Vbra_6202	A0A0G4EXV1	A0A0G4GDX9	Uncharacterized protein.	Exonuclease domain-containing protein.	0.455
Vbra_13934	Vbra_8570	A0A0G4EXV1	A0A0G4EZC6	Uncharacterized protein.	Pan3_PK domain-containing protein.	0.519
Vbra_16651	Vbra_18927	A0A0G4G0T1	A0A0G4GWN0	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.666
Vbra_16651	Vbra_19826	A0A0G4G0T1	A0A0G4H7Q2	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	PABC domain-containing protein.	0.746
Vbra_16651	Vbra_3972	A0A0G4G0T1	A0A0G4EJG7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.811
Vbra_16651	Vbra_6202	A0A0G4G0T1	A0A0G4GDX9	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Exonuclease domain-containing protein.	0.455
Vbra_16651	Vbra_8570	A0A0G4G0T1	A0A0G4EZC6	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Pan3_PK domain-containing protein.	0.519
Vbra_18526	Vbra_18927	A0A0G4GRZ7	A0A0G4GWN0	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.666
Vbra_18526	Vbra_19826	A0A0G4GRZ7	A0A0G4H7Q2	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	PABC domain-containing protein.	0.746
Vbra_18526	Vbra_3972	A0A0G4GRZ7	A0A0G4EJG7	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.811
Vbra_18526	Vbra_6202	A0A0G4GRZ7	A0A0G4GDX9	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Exonuclease domain-containing protein.	0.455
Vbra_18526	Vbra_8570	A0A0G4GRZ7	A0A0G4EZC6	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Pan3_PK domain-containing protein.	0.519
Vbra_18927	Vbra_13934	A0A0G4GWN0	A0A0G4EXV1	MIF4G domain-containing protein.	Uncharacterized protein.	0.666
Vbra_18927	Vbra_16651	A0A0G4GWN0	A0A0G4G0T1	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.666
Vbra_18927	Vbra_18526	A0A0G4GWN0	A0A0G4GRZ7	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.666
Vbra_18927	Vbra_19826	A0A0G4GWN0	A0A0G4H7Q2	MIF4G domain-containing protein.	PABC domain-containing protein.	0.754
Vbra_18927	Vbra_21553	A0A0G4GWN0	A0A0G4FQY5	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.666

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

27

average node degree:

4.91

avg. local clustering coefficient:

0.774

expected number of edges:

12

PPI enrichment p-value:

9.04e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046653

Tetrahydrofolate metabolic process

4 of 10

2.1

2.23

3.44e-05

GO:0009212

Pyrimidine deoxyribonucleoside triphosphate biosynthetic process

3 of 3

2.5

2.18

8.56e-05

GO:0009221

Pyrimidine deoxyribonucleotide biosynthetic process

3 of 5

2.28

2.0

0.00015

GO:0006544

Glycine metabolic process

3 of 6

2.2

1.98

0.00015

GO:0006730

One-carbon metabolic process

3 of 8

2.07

1.9

0.00017

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005829

Cytosol

6 of 344

0.74

0.47

0.0189

GO:0005737

Cytoplasm

10 of 1154

0.44

0.32

0.0169

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1448

Tetrahydrofolate metabolic process

4 of 5

2.4

2.76

5.17e-06

CL:1073

Glycine catabolic process, and Glycine biosynthetic process

2 of 5

2.1

0.87

0.0241

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00670

One carbon pool by folate

6 of 22

1.93

3.44

8.59e-09

map00240

Pyrimidine metabolism

5 of 49

1.51

1.77

2.00e-05

map01100

Metabolic pathways

10 of 1219

0.41

0.32

0.0091

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005829

Cytosol

8 of 605

0.62

0.4

0.0242

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0554

One-carbon metabolism

3 of 6

2.2

1.75

0.00045

KW-0545

Nucleotide biosynthesis

2 of 5

2.1

0.98

0.0145

KW-0808

Transferase

7 of 370

0.78

0.57

0.0043

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