STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDIG_26560ATP dependent RNA helicase (Dbp7), putative; Belongs to the DEAD box helicase family. (772 aa)    
Predicted Functional Partners:
PDIG_06780
ATP dependent RNA helicase (Rok1), putative.
  
0.964
PDIG_06740
Ribosome assembly protein Noc2, putative.
   
 
 0.964
PDIG_71250
rRNA biogenesis protein RRP5, putative.
   
 0.954
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.940
PDIG_47630
rRNA maturation protein (Nop14), putative.
   
 0.937
PDIG_86220
Small nucleolar ribonucleoprotein complex subunit, putative.
   
  0.935
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.932
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.931
PDIG_45670
DEAH-box RNA helicase (Dhr1), putative.
   
 0.930
PDIG_14920
Sas10/Utp3 family protein.
   
  0.930
Your Current Organism:
Penicillium digitatum
NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26
Server load: low (30%) [HD]