STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV88745.1OmpA family protein. (193 aa)    
Predicted Functional Partners:
AFV88746.1
Hypothetical protein.
       0.804
AFV88748.1
Hypothetical protein.
       0.767
AFV88747.1
CAAX amino terminal protease family protein.
       0.569
AFV88744.1
Hypothetical protein.
       0.561
AFV89352.1
TP901 family phage tail tape measure protein.
  
    0.546
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
   0.523
AFV88749.1
CutC family protein; Belongs to the CutC family.
  
    0.517
AFV89876.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
    0.503
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.448
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.444
Your Current Organism:
Acidipropionibacterium acidipropionici
NCBI taxonomy Id: 1171373
Other names: A. acidipropionici ATCC 4875, Acidipropionibacterium acidipropionici ATCC 4875, Acidipropionibacterium acidipropionici DSM 20272, Acidipropionibacterium acidipropionici JCM 6432, Propionibacterium acidipropionici ATCC 4875, Propionibacterium acidipropionici DSM 20272, Propionibacterium acidipropionici JCM 6432
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.