STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS60114.1Farnesyl-diphosphate farnesyltransferase. (289 aa)    
Predicted Functional Partners:
SDS13614.1
Squalene-associated FAD-dependent desaturase.
  
 0.975
SDR82215.1
Phytoene desaturase.
  
 
 0.956
SDS13582.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 0.871
SDS60159.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
 0.868
SDS60102.1
Squalene synthase HpnC.
 
   
0.860
SDR68263.1
Membrane protein involved in the export of O-antigen and teichoic acid.
    
 0.847
SDS21782.1
Methyltransferase domain-containing protein.
    
 0.847
SDT04740.1
Phytoene dehydrogenase-related protein.
  
 
  0.842
SDS60069.1
1-deoxy-D-xylulose-5-phosphate synthase.
     
 0.796
SDS23645.1
SAM-dependent methyltransferase, MidA family.
     
 0.776
Your Current Organism:
Actinopolymorpha singaporensis
NCBI taxonomy Id: 117157
Other names: A. singaporensis, Actinopolymorpha singaporensis Wang et al. 2001 emend. Nouioui et al. 2018, Actinosingapura polymorpha, DSM 22024, JCM 10761, NBRC 100040, NRRL B-24113, strain IM 7744
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