STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS86679.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (413 aa)    
Predicted Functional Partners:
SDS86718.1
Uncharacterized conserved protein.
 
     0.942
SDS09604.1
Uncharacterized conserved protein.
  
     0.773
SDR89027.1
Uncharacterized conserved protein.
  
     0.771
SDS14807.1
Uncharacterized conserved protein.
  
     0.771
SDS89878.1
Uncharacterized conserved protein.
  
     0.770
SDS89788.1
Uncharacterized conserved protein.
  
     0.759
SDS79026.1
Uncharacterized conserved protein.
  
     0.755
SDR81183.1
Uncharacterized conserved protein.
 
     0.718
SDR85614.1
Uncharacterized conserved protein.
  
     0.662
SDS11405.1
Uncharacterized conserved protein.
  
     0.617
Your Current Organism:
Actinopolymorpha singaporensis
NCBI taxonomy Id: 117157
Other names: A. singaporensis, Actinopolymorpha singaporensis Wang et al. 2001 emend. Nouioui et al. 2018, Actinosingapura polymorpha, DSM 22024, JCM 10761, NBRC 100040, NRRL B-24113, strain IM 7744
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.