STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT05625.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (215 aa)    
Predicted Functional Partners:
SDS79204.1
Signal transduction histidine kinase.
  
 0.983
SDT05636.1
Signal transduction histidine kinase.
  0.962
SDS30543.1
GAF domain-containing protein.
  
 0.939
SDS52869.1
PAS domain S-box-containing protein.
 
  0.873
SDS53034.1
GAF domain-containing protein.
  0.871
SDT08789.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.847
SDR96511.1
Signal transduction histidine kinase.
 
  0.846
SDR75711.1
Signal transduction histidine kinase.
 
  0.842
SDS99127.1
Signal transduction histidine kinase.
 
  0.841
SDS58180.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.826
Your Current Organism:
Actinopolymorpha singaporensis
NCBI taxonomy Id: 117157
Other names: A. singaporensis, Actinopolymorpha singaporensis Wang et al. 2001 emend. Nouioui et al. 2018, Actinosingapura polymorpha, DSM 22024, JCM 10761, NBRC 100040, NRRL B-24113, strain IM 7744
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