STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT09867.1Iron-regulated ABC transporter membrane component SufB. (470 aa)    
Predicted Functional Partners:
SDT09780.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SDT09746.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.992
SDT09720.1
Nitrogen fixation protein NifU.
 
  
 0.978
SDT09887.1
Predicted transcriptional regulator, ArsR family.
  
    0.973
SDR96393.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.917
SDT09690.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.898
SDT13472.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.881
SDT09831.1
Fe-S cluster assembly protein SufD.
 
   
0.832
SDS90882.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.769
SDT14974.1
isopenicillin-N epimerase.
 
 
 0.706
Your Current Organism:
Actinopolymorpha singaporensis
NCBI taxonomy Id: 117157
Other names: A. singaporensis, Actinopolymorpha singaporensis Wang et al. 2001 emend. Nouioui et al. 2018, Actinosingapura polymorpha, DSM 22024, JCM 10761, NBRC 100040, NRRL B-24113, strain IM 7744
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