Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A4X09_g1465 | A4X09_g311 | A0A177V1B8 | A0A177V3K4 | ENDO3c domain-containing protein. | Uncharacterized protein. | 0.506 |
A4X09_g1465 | A4X09_g4353 | A0A177V1B8 | A0A177UL53 | ENDO3c domain-containing protein. | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | 0.987 |
A4X09_g1465 | A4X09_g6131 | A0A177V1B8 | A0A177UCB3 | ENDO3c domain-containing protein. | Uncharacterized protein. | 0.445 |
A4X09_g1465 | A4X09_g7021 | A0A177V1B8 | A0A177U7I8 | ENDO3c domain-containing protein. | XPGN domain-containing protein. | 0.474 |
A4X09_g1465 | FEN1 | A0A177V1B8 | A0A177UJJ9 | ENDO3c domain-containing protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.597 |
A4X09_g1465 | NTH1 | A0A177V1B8 | A0A177V1W1 | ENDO3c domain-containing protein. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.623 |
A4X09_g2064 | A4X09_g311 | A0A177UYW4 | A0A177V3K4 | DNA ligase. | Uncharacterized protein. | 0.726 |
A4X09_g2064 | A4X09_g3642 | A0A177UYW4 | A0A177UP98 | DNA ligase. | XPGI domain-containing protein. | 0.695 |
A4X09_g2064 | A4X09_g4244 | A0A177UYW4 | A0A177UNN4 | DNA ligase. | DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. | 0.860 |
A4X09_g2064 | A4X09_g4353 | A0A177UYW4 | A0A177UL53 | DNA ligase. | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | 0.978 |
A4X09_g2064 | A4X09_g6131 | A0A177UYW4 | A0A177UCB3 | DNA ligase. | Uncharacterized protein. | 0.829 |
A4X09_g2064 | A4X09_g7021 | A0A177UYW4 | A0A177U7I8 | DNA ligase. | XPGN domain-containing protein. | 0.868 |
A4X09_g2064 | FEN1 | A0A177UYW4 | A0A177UJJ9 | DNA ligase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.965 |
A4X09_g2611 | A4X09_g311 | A0A177UU66 | A0A177V3K4 | DNA_LIGASE_A3 domain-containing protein. | Uncharacterized protein. | 0.726 |
A4X09_g2611 | A4X09_g3642 | A0A177UU66 | A0A177UP98 | DNA_LIGASE_A3 domain-containing protein. | XPGI domain-containing protein. | 0.695 |
A4X09_g2611 | A4X09_g4244 | A0A177UU66 | A0A177UNN4 | DNA_LIGASE_A3 domain-containing protein. | DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. | 0.860 |
A4X09_g2611 | A4X09_g4353 | A0A177UU66 | A0A177UL53 | DNA_LIGASE_A3 domain-containing protein. | DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. | 0.978 |
A4X09_g2611 | A4X09_g6131 | A0A177UU66 | A0A177UCB3 | DNA_LIGASE_A3 domain-containing protein. | Uncharacterized protein. | 0.829 |
A4X09_g2611 | A4X09_g7021 | A0A177UU66 | A0A177U7I8 | DNA_LIGASE_A3 domain-containing protein. | XPGN domain-containing protein. | 0.868 |
A4X09_g2611 | FEN1 | A0A177UU66 | A0A177UJJ9 | DNA_LIGASE_A3 domain-containing protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.965 |
page 1 of 5